Gene detail

Detailed information of OS493_028424-T1 in Lophelia pertusa

Genomic Location: scaffold_164:55823...73187
NR annotation: KAJ7383346.1, Phosphatidylinositol 4-kinase alpha [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_028424-T1

ATGGATGGCCGCGAGGGAACAGTCCAAGACTTTGCTGCTCATTGCAGTGGTATAATAATGGAGGCGATCAAGTGGGCGCCAGAGACGACAAGATCCTTACTGCAGGATTATATCATGGAGCTGGGGAATGCGTCTCAAGGCGTGTCACATCACACTGGTCTGTCCCTCGCTACAGAGAATGTTCTGCAGTGTGCGGGATTAAACCCTTCCTCTGTAGCTGTTAGTCACGTGTTCCTGGAGAAGCGACCAAACTGTGTAAAACAGAACACATCTCAATTAGTGTCGGGTCTCACACTGAGGAGTAGATATCTGGGAGAGATTTTTGGAATGAGGGAACTGTTAGCCTGTCAAGCCCCTAACAATCCAGATGTGAATGTCGCGTTATCAGCCATTTTAAACAAGCAGTTAGTGGAGGCCAAATCAAGCACAGAAGATGCCTTTGTGGCGGCCATGTTCAGAGCGGCTGCATTTCTTGTCACGTCCCAAGCTGTTGATCGTCAGTTACTTCATAACGTGTGCTGGTGTCCAGCTGATCTGTTCACTGAAGTGTCCATGTCTGCTGCAGTGTCTTGCTGGGAGTGGATCTTAGGAGCTCGGCAAGACCTGGAACTGCCAATTTTAAGTAAAATCAGCGCAGCTTGGCAGTGGACTGTTTGTCGTCGGGTTGGTTTATTTGCCACAGACCTGAAGGTCGAGAGCCCATTGGCGGCCTTTGCCGACGACAGATCCCCACCCACTCCCCCTAATGTTGCTCCGCACGACATCTGGATCAAGTTTCTTACTCGAAGATTTGAGGTGATCAAGTATTACAGTTATGACCAGGTGGAGATCTTTGCTACAATGCTCCAGCGTTGTCTTCCGCTGTGTGTGGGCAAGAGGAACACTCTGTCTCGTCACATCGCCGCCCTCAGAGCCAGGTTCAGGTTGCTACATCTCGGCCTGTCCATGCTGCAAGGAGACTTCTTAACAAACTCCGTCATGAAAAATGTTCTACGGGAAAGGATTTACTGCAATGCATTGGACTGTTTCAGCATTGAACCCATGTGGCCTGTGAGTAAGGACACAGAACTACGCGAAGACATTCAAGTGCTGATCAAATTCTGGCAGGCGATGCATTCCGACAAGAAGTACATGAAGTACTTCATGGTAGCGGCCCCTGTGGACCCAACCCAGCTACTGCCTCACAGCTCCTCAGGAGGGTCCCAGTACACTAGTGGCTCATCTGGTTTAGGGCCTTACCTGCAGGGTAACCGCTGGATGAACACGATACCGCTGTCCAGTAATCTGTCGTCCCGGCGCTCTGCCACAGGGACATCAGCCGGCAAAGAAGCCACAGGAGGACAACACGTGCTGAAGGATTACTTGAAACGACGCAACCTTATCCTAGCTCTGATCCGCCGAGAGATTGAACGGCTTTCCACTTGGCATAACTCCATGGCACGACCAGAGCTCAACTTTACTGGGATGGAGTCGCTGGTGAACTGGGCTAATCAGACAGTTTTTACCGAGAGGATCTGGAGAGATCTGGTTAGGCTGGCGTGGCACATTTCACCGAATATCGCTGTATTTCTACCAGCAAGGTTCAAAGAAATATCTGCTGTTCACAAAGAAGTCAGTCGACTTGTCAGGATTCATCCCACAGCAGTATCGGATCTACCTGAAGCTATACAGTACCTCGTAACCGAGAAGAACATCAAATCCGACATCCCCGAGTTGACGCATGTGCTGTGCTGGTCAGCTATTCCTCCTGTACAGGCTATGGCGTACTTCTCACAACAGTTCCCACCCCACCCCCTGACAGCACAGTATGCCATCCGTGTGCTCCAGTCCTTCCCGCCAGACGCCATCTTGTTGTACATTCCTCAGCTCGTGCAAGCCACGCGTTATGACGCGCTGGGGTTCGTTAGTGAGTACATATTATGGGCCGCACAACATTCCCAGCTTCTCGCTCATCAGCTGATCTGGAACATGAAAACCAACGTGTTCACCGACGAGGAAGCACTGCACAAAGATCCAGAAATTGGCGTCCACTTAGAAAATCTGATTGACAGGATCACAGACTCGCTTTCAGGAACAGCGCTTGATTTCTACAAGAGGGAATTTGACTTCTTTGATAAAGTCACGTCAATATCAGGAACAATAAGACCGTATCCGAAAGGTCCCGAAAGGAAACAGGCCTGCCTTGAAGCGCTAAGCAAGATACAGGCCCAAGAAGGTGTGTACCTTCCAAGCAACCCGGAGGCACTGGTGCTGAGTATTGATTACAACTCTGGGACTCCCATGCAGAGTGCAGCCAAGGCCCCATTCCTCGCGCGGTTCAAAGTCAAGCACTGCGGCATTCAAGAAATGGAGAATATCAACACTTCCAAAGATTTTTCATCTTCAGATAGCGAGGATGAAGGGGAGAAGGCAAAGATTTACTGGCAAGCCGCCATATTTAAAGATATGCTGGCCTTGCAGGTCATATCTCTGTTTAAGAACATCTTTGAGCAAGTGGGATTGGATGTGTACCTTAAACCTTACCGAGTTGTAGCTACTGCACCAGGGAATGGTGTCATTGAATGCGTACCAGATTCCAAATCACGTGATCAACTTGGCCGTCAAACCGAGGTGGACTTGTACGAGTATTACCAGAAGACGTATGGTGATGAAAGCTCTTCCGCCTTTCAACAGGCTCGAGCGAACTTTATTAAAAGCATGGCAGCATACTCCATTGTCAGTTTCCTGCTGCAGATTAAAGACAGACATAATGGCAACCTGATGCTCAACAGAGCTGGGCATATTATACATATAGATTTTGGGTTCATGTTTGAGTCGTCTCCTGGTGGTAACCTTGGTTTTGAGCCTGACATGAAATTGTCACATGAGATGGTAATGATCATGGGTGGAACAATGGAGTCTCCTTCATTCAGATGGTTCATGGATCTTTGTATCAAAGCCTATCTAACAGTCAGACCTTACCAGGAGTCAATCGTGTCCCTTGTGGCTTTGATGTTGGACACCGGTCTGCCATGTTTCCGGGGGGAGACACTAAAGAGACTCAGAGCAAGATTCAGTCCTGCACAGAGCGAGCTAGAAGCAGCCGCCTACATGGGGAAGGTCATCCGGGACTCCTACTTAAATTACAGGTAA

Transcript

OS493_028424-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O02811	Phosphatidylinositol 4-kinase alpha OS=Bos taurus OX=9913 GN=PI4KA PE=2 SV=2
P42356	Phosphatidylinositol 4-kinase alpha OS=Homo sapiens OX=9606 GN=PI4KA PE=1 SV=4
E9Q3L2	Phosphatidylinositol 4-kinase alpha OS=Mus musculus OX=10090 GN=Pi4ka PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002988 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19274 all species →	PI4K_N	PI4-kinase N-terminal region	Family	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan
PF00613 all species →	PI3Ka	Phosphoinositide 3-kinase family, accessory domain (PIK domain)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042236 all species →	Homologous_superfamily	Phosphoinositide 3-kinase, accessory (PIK) domain superfamily	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR045495 all species →	Domain	PI4-kinase, N-terminal	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR018936 all species →	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR001263 all species →	Domain	Phosphoinositide 3-kinase, accessory (PIK) domain	Interproscan
IPR015433 all species →	Family	Phosphatidylinositol kinase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10048 all species →	PHOSPHATIDYLINOSITOL KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004430 all species →	Molecular Function	1-phosphatidylinositol 4-kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0052742 all species →	Molecular Function	phosphatidylinositol kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00888	PI4KA; phosphatidylinositol 4-kinase A	EC:2.7.1.67	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_028424-T1 global co-expression network