Gene detail

Detailed information of OS493_028456-T1 in Lophelia pertusa

Genomic Location: scaffold_164:418613...420586
NR annotation: KAJ7383375.1, hypothetical protein OS493_028456 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BMN4	Leishmanolysin-like peptidase OS=Mus musculus OX=10090 GN=Lmln PE=2 SV=1
Q9VH19	Leishmanolysin-like peptidase OS=Drosophila melanogaster OX=7227 GN=Invadolysin PE=2 SV=2
Q29AK2	Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA17800 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002387 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01457 all species →	Peptidase_M8	Leishmanolysin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001577 all species →	Family	Peptidase M8, leishmanolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10942 all species →	LEISHMANOLYSIN-LIKE PEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13539	LMLN; leishmanolysin-like peptidase	EC:3.4.24.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028456-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

5.5Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.71	4.36
polyp at pH7 6	18	18	2.04	5.53
coral polyp · control treatment	16	16	2.66	5.21
coral polyp · oil and dispersant treatment	16	16	2.18	4.06
coral polyp · oil treatment	16	16	2.16	4.85
coral polyp · dispersant treatment	16	15	1.99	4.53
Polyp	10	9	0.33	1.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.