Gene detail

Detailed information of OS493_028551-T1 in Lophelia pertusa

Genomic Location: scaffold_166:7142...15949
NR annotation: KAJ7370941.1, hypothetical protein OS493_028551 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
M0R2J8	Doublecortin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=DCDC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003002 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028551-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR043188 all species →	Family	Doublecortin domain-containing protein 1	Interproscan
IPR036572 all species →	Homologous_superfamily	Doublecortin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46302 all species →	DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:1902412 all species →	Biological Process	regulation of mitotic cytokinesis	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028551-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028551-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

83.1Max TPM

21.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.07	40.31
polyp at pH7 6	18	18	21.00	37.39
coral polyp · control treatment	16	16	25.08	75.62
coral polyp · oil and dispersant treatment	16	16	25.91	83.12
coral polyp · oil treatment	16	16	21.95	38.46
coral polyp · dispersant treatment	16	16	16.31	25.77
Polyp	10	10	17.11	31.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.