Gene detail

Detailed information of OS493_028635-T1 in Lophelia pertusa

Genomic Location: scaffold_167:25704...50001
NR annotation: KAJ7354976.1, hypothetical protein OS493_028635 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_028635-T1

ATGATGATGCTTAGGATACGAAGGAAACGCAGCAGATTGCTTTTTATTGTCTGTCTTGGGGTTGTGTTGTTGTACACGGCATACTCCAAAGCCTGGTTTGGAGAAGTAGAATCAGAAGACAGAAAAGACAACAAATACAAGATCGTCATCATTGGTTCAGGTCCAACAGGTCTAGGCGCCGCTCGACGACTTTATGAACTAAGCGAACAGTTTCCTGGCATATCCGTTACAATCCTTGAACAGCATGACAAGCCAGGCGGCCTGGCTTCATCCGAGAGAGATGATCAAGGCTTCCTCTGGGACATGGGAGGGCACGTGGTATTTTCACATTATCAATACTTCGACGACACGCTAGACAGGGCCATAAATAACTGGAATCGGAGAGAAAGAGCGGCATATGCGTTCATGAAGGGATCTGATGGCATTAGAAGGTTTATTCCATACCCCGTTCAAAGCAACATCGAGGTGATGGACAAAGTGGACCAGCAGAAGTGCTTATCAGGGCTTGAAGACGTTGTAGCAAATGCGGTAAAGGACGAGCCTGCTAACTTCGACCAGTGGCTTGTTCGCAATTTTGGTGTTGGTCTTTGTGAAGTATTCATGAGAAAGTATAATAGAAAAGTTTGGACAGTAGATCCTACGGAAATGAACTCTGTCTGGGTGGGTGAGCGCGTAACTGTTCCTAACATCACTTCAATCAAGCTTAAAATTTCAGGTTATGACAACGGAAATTTAGTGAAAGAATCAGCCTGGGGACCTAATCATTTCTTTCGATTTCCAAAATATAAAGGAACAGGTGGAATATGGCAAGCCGTTGCCGACAGTCTTCCTCGCGAATGGTTTAAGTTTCGTCATAAAGTCGTGGGCCTGGATATCGACACAAATTCTGTAATGATTGAGAGTGGCACATGGAAGAAATCAATCCACGAATTGAAGTTCGACACTCTAATATCTACCATACCGCTCGACATGCTTGTCAATATGATAACGGGAAGAAATGGGTCTCCAGAAGAGATGAAGGAAATGACATCCCATCTGGTGTATTCACACACCCATGTGATAGGTATTGGGCTGACTGGGCAACCTCCACAGGTGCTTTTAAATAAATCCTGGATGTACTTTCCTGATTCCGATTCTCCATTTTACCGGATAACAGTTTTCTCCAGCTACTCAGACGATCACGTTCCAGAGCCTGGAAAACAATGGTCACTCATGTGCGAGGCAGCAGAGCCTAAACATAACCCAAATTTAGAATACTGGACAAAGGACAATCTGATCACTGCTACTATTCAAGCATTGATAGTTTACAGATTCATTACTCCAGACATGGTTGTTTCAAAATACCATCGACGACTGGATCACGGGTATCCTATTCCTTCTATCAACAGAGAAGTGATTCTGGACAAGGTGCAACCATGGTTGGAATCTAAAGACATCTACTCGCGAGGTCGGTTTGGTGGGTGGCGATATGAAGTTTCCAATCAAGACCACTCGTTCATGCAGGGCGTTGAAGTCACCGATAAGCTGTTAAGAGGAATCCCCAAGGAAACTTACTTTGACCCAAATCTTGTCAATTCCAGGAGAAACACTGGTCGGAAATTCTCAGAACGTTTGAATGACTACGAATTTGTTATCGCTCATTATAACGAAAGTCTTGATTGGATTAGACCGATAGTCAACCACACCCATGTCTATCATAAGGGTAAGGATCTGCAGCCTCCACCCTTACACTTATACGCCTGGGAAAGGTTACCCAACGTTGGACGGGAGAGTCACACTTACCTGTATCACATCATAAAAAATTATGAAAAGCTGCCCGAGATAACGGTTTTCCTTCAAGGCGACAGTTCGCATCTCCATGGTGAATACATTAAAAATCCTATGGAGTACGTATATAATATCAAGAAGAACATGAATTGTTCAATGGGCATATCACGTCTCGCATCGTGGGGAAGAATTAAGCACTTCGAAAAGTGGCGTAACTTTATAAGAAGTGGTGCAATGCGAGTTGCTAAGTTTACTGTGGGGAGATTTTTCCAAAAACTGTTTGGCTTCAAACACCCAAGGTACGTTCATTGGTGCCCGGGCGCATGTTTCGCTACAACGCGGGAAATTATCCAGAAGCATCCAAAAGACTTTTATATTAAAGCCATTTCATACGTGGATAATCATCGGAACCCGGAGGAAGGTCACTACTTTGAAAGACTTTGGTCTACGATATTTTCATAA

Transcript

OS493_028635-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4W1X2	UDP-galactopyranose mutase OS=Aspergillus fumigatus OX=746128 GN=glfA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007894 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF11913 all species →	DUF3431	Protein of unknown function (DUF3431)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR021838 all species →	Family	Protein of unknown function DUF3431	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43734 all species →	PHYTOENE DESATURASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028635-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_028635-T1 global co-expression network