Detailed information of OS493_028644-T1 in Lophelia pertusa

Genomic Location: scaffold_167:142724...145567
NR annotation: KAJ7354983.1, Calpain-6, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O08688Calpain-5 OS=Mus musculus OX=10090 GN=Capn5 PE=1 SV=1
Q8R4C0Calpain-5 OS=Rattus norvegicus OX=10116 GN=Capn5 PE=1 SV=1
O15484Calpain-5 OS=Homo sapiens OX=9606 GN=CAPN5 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000851 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01067
all species →		Calpain_IIICalpain large subunit, domain IIIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050420
all species →		FamilyCalpainInterproscan
IPR022682
all species →		DomainPeptidase C2, calpain, large subunit, domain IIIInterproscan
IPR036213
all species →		Homologous_superfamilyCalpain large subunit, domain III superfamilyInterproscan
IPR022683
all species →		DomainPeptidase C2, calpain, domain IIIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10183
all species →		CALPAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004198
all species →		Molecular Functioncalcium-dependent cysteine-type endopeptidase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006508
all species →		Biological ProcessproteolysisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_028644-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_028644-T1 global co-expression network
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