Gene detail

Detailed information of OS493_028707-T1 in Lophelia pertusa

Genomic Location: scaffold_168:94633...98385
NR annotation: KAJ7325985.1, Inositol hexakisphosphate kinase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PD10	Inositol hexakisphosphate kinase 1 OS=Mus musculus OX=10090 GN=Ip6k1 PE=2 SV=1
Q9ESM0	Inositol hexakisphosphate kinase 1 OS=Rattus norvegicus OX=10116 GN=Ip6k1 PE=2 SV=1
Q92551	Inositol hexakisphosphate kinase 1 OS=Homo sapiens OX=9606 GN=IP6K1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002862 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028707-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR005522 all species →	Family	Inositol polyphosphate kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12400 all species →	INOSITOL POLYPHOSPHATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000828 all species →	Molecular Function	inositol hexakisphosphate kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0032958 all species →	Biological Process	inositol phosphate biosynthetic process	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028707-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028707-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

73.1Max TPM

30.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.05	46.12
polyp at pH7 6	18	18	22.63	34.82
coral polyp · control treatment	16	16	32.47	58.34
coral polyp · oil and dispersant treatment	16	16	40.59	73.10
coral polyp · oil treatment	16	16	31.80	43.92
coral polyp · dispersant treatment	16	16	35.39	50.18
Polyp	10	10	15.29	28.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.19
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.29
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.59
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.