Gene detail

Detailed information of OS493_028739-T1 in Lophelia pertusa

Genomic Location: scaffold_168:426893...440301
NR annotation: KAJ7326017.1, Integrator complex subunit 10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K2A7	Integrator complex subunit 10 OS=Mus musculus OX=10090 GN=Ints10 PE=1 SV=3
Q6TNU3	Integrator complex subunit 10 OS=Danio rerio OX=7955 GN=ints10 PE=2 SV=1
Q9NVR2	Integrator complex subunit 10 OS=Homo sapiens OX=9606 GN=INTS10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004087 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21045 all species →	INT10	Integrator subunit 10	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026164 all species →	Family	Integrator complex subunit 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16055 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028739-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028739-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

10.3Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.83	7.24
polyp at pH7 6	18	17	6.67	9.80
coral polyp · control treatment	16	16	5.92	9.51
coral polyp · oil and dispersant treatment	16	16	3.69	7.77
coral polyp · oil treatment	16	16	5.58	9.40
coral polyp · dispersant treatment	16	16	4.05	10.28
Polyp	10	9	4.34	7.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.