Gene detail

Detailed information of OS493_028777-T1 in Lophelia pertusa

Genomic Location: scaffold_169:93928...106087
NR annotation: KAJ7389809.1, hypothetical protein OS493_028777 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_028777-T1

ATGAATACTGCCAAAAGGGAAGCGCATTCCCTACCAAGGAACGACCAGAAACGGCGATGCGAAGGTGTACCATCTGTGAAGAAGGTCAACTTCAGACGCAGTAACGATTGCGTGTTGACAGCAGACCATGCAAAAAATAACAAAATTCCGAAAACCTCTGGCCTGAAAGTAAGAAGAAGTAGGAGGTCAAAACGAAGGAGCTCGCATAGCAGCTGTAGTGAGAGTGAAGTAGGTTGCAATGGGAAAAATAGCGAACTCTCAAAGAATGAAGACCGATCCGTAAACTGCCAAAACCCTTTGGCTGTTGTTGATGTTTCAGGACAGAAAAACTGTTGTAGTACTCCAATCAGGAAGGGAAATGACATGCAGGATTGTGTGGCCCAAGTTTCCGCGAGTGTTCGCAAACATGAACAAACGTTTGAACGAGATGCCAGCTCGCCCTTTGGAACTGGAATAAAAAGTATTGTGAACAATTCCAGCTTTTATGACGATGATGGCGTTTTAGCTTCCTTAAACTTGAGTGAAATCATTACTTCGTCAGGTGCCTCGAATCCTGTTCAACGCGATAGTAATTGTACAAGTTCGATGAAAAAGGAATCAAACCAGTTTTATGGTTTGCCAGTTGAAGTCAAAGAACTGTTACATAAATTCAAAGGAATAGGAAGTTTGTATGGCTCTGCTGGAGTGGAGGCCAGAGAGTGGGAAGCATCGAAGAGGAAGGTCAAGCCACACGCAGTGGAGGAACACTGTGGAACGAGATGTAAGGCTAGCATTGGAGTGGAACAAAGTCTGGAAGTGGCAGACAGACTGCCTCAATCTGCCAGCTATCAAGGAGAGAAGAAACTTGATTTACTCTCTTCCAACAAGTGGAGGCAAAACCTTGGTTGCAGAAATTCTTATCTTCAAAGAGCTGTTGTTACAAAAAAAGGATGTCTTGTTTGTCTTCCGTTTGTGTCCATTGTTCAGGAAAAGGTTAAATCTTTGACTCAATTTGCTGTTGAGCTTGGCTTCTTAGTGGAGGAGTATGCTGCTAGCCGAGGAAAAATCCCACCTCGCAACAGACGCAAAAAGAAATCTGTGTACATTGCAACAATAGAAAAGGCAAATGCCTTGGTTAACAGCCTCATTGGAGAAAACAGAATTTCAACGTTGGGTCTAGTGGTAGTCGATGAGAAAGTGAAATACCTACACGTATGGGCTGCATATGTTAGGAGAGCCGGAAGAGGTGCTACATTAGAGATGTGTTTGGCCAAGCTCATGTTTGTGTCTCCCACCACTCAGGTAATTGGAATGAGTGCCACTTTAAGCAACATTGCGGACCTGAAGACATTTTTAAAGGCTGAGGTGTATTCAAATGATTTTAGACCAGTTGAGCTGAAGGAGTTTGTGAAAGTGGGACGTGATATTTATAAAGTTCCTAAACCATCAGATCCTGAGGACGAAACTCACAAACCTGTCAGGAGGATTAATAACCCACAGGGCCAAACCAAAGAACAGTTGCTGCAGGATCCTGATCAGTTATTAGCCTTGGTTTTGGAGGTTATTCCACACCACTCATGCCTGGTATTTTGTTCAACTAAGAAGAACTGTCAAAGCCTGGCATTGCTGCTCATTAAGTTTATGCCCAGGGAAATATGTCAAGTGAAAGCCATGGGGAAACATCAACTGATGAAAGCTCTGTACAGTGAAGCTTGTGGTCTGTGCCCTGTCTTGAAACAGACCATTCCTTTTGGTATTGCTTATCATCACAGTGGACTGACGATGGACGAGCGGAAACTTATTGAAGATGGCTACAGCCAGGGTGTGCTTTGCCTTCTGATGTGCACTTCGACTTTGGCAGCGGGTGTTAACTTACCGGCTAAGAGAGTGATTGTCCGCGCTCCGTATGTCGGTCGCTCTATACTCAGTCAGAGTCAGTACAAACAGATGATTGGTAGAGCAGGACGAGCTGGGATAGACACGTCAGGGGAGAGTATTCTTATTGTCAAAGATGCTGACAAGCCTAAGATCCACCACCTGTTTTCAGGCCCCTTGGAGAGCTGTTGCAGTAAGCTGTTGTCTGAAAATGGCAAAGGATTACGAGCGATGCTCCTCACACTTGTTGGATTAAAGATTTGCACGACAACAGAAGAACTAACACAGTTTATGAAGAATACATTGCTGTCCGTGCAATCAGAGTCGAAGTTAGACATTAATGCACAGATGCAGGCATCGCTGGACTGCTTACAAAAGCTGGGACATGTTCACATTTCTGACCCCACTGAGAGCAGGAAGATTGAAGTTACTCATCTGGGACAGGCTACCTTTAAAGGGTGCATTGATGTGAATAGTAGTCCTATGATCTACAGTGAGCTTGCTAGAGCTCAGGAGAACCTTGTTCTAGCCAATGAACTGCATCTGCTCTATCTTGTCACGCCCCCGGACATGCGGGATTCAGTTGAGCCCGAGTGGATGGTTTACTTCAAACAGGTGTTATCGTTAAGTGAGTCAGAGCAGAAAGTAGCTGATTTGTTGGGGGCTACAGAGAGTTATTTATCAAGAAGAGCAACTGGACAGCGAGTCAAAAAGGACGACAGTACAGAAGCCACAGTGAGGCGGTTCTACCTAACTCTTATCCTTTACAAGTTGTTGAAAGGGAACACAGTATGGAATTTAGCCGGTGTGTTTAACGTGACTCGAGGATTTGTGCAGAATCTGTTGACTTCAGCTTCTTCGTTCGCCTCGTGCATGGTGCACTTTACCCGCGAACTGAACGAGTTTTGGGGCGTGCATCTGTTGCTAGAAGCCATGGTGAAGAAGCTGTCCTTCACAACAAGCTTGGAGCTTGTTCCTCTAATGGAGGTCCCTGGTGTAAAACAGGCTCGTGCGCATCAGTTATTCAAGGAAGGCTACAAAAGCCTTAGCAGCCTGGCCTGGGCTGATGCCAATTCACTTGTGACACAGATTGAACATCTCTCAAGGCGACAGGCTCTTCAGATCGTTTCCGCTGCCAAGATGCTTTTAGAGGAGAAAGCCGATGCTTTGAGAGAAGAAGCAGAGGAGATGACAAGCGCGCCAGAATTACACACGGCAGAATGA

Transcript

OS493_028777-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2VPA6	Helicase POLQ-like OS=Mus musculus OX=10090 GN=Helq PE=1 SV=2
Q8TDG4	Helicase POLQ-like OS=Homo sapiens OX=9606 GN=HELQ PE=1 SV=2
Q9VSE2	Helicase POLQ-like OS=Drosophila melanogaster OX=7227 GN=mus301 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002976 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20470 all species →	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21099 all species →	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR046931 all species →	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR048960 all species →	Domain	POLQ-like, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028777-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_028777-T1 global co-expression network