Gene detail

Detailed information of OS493_028792-T1 in Lophelia pertusa

Genomic Location: scaffold_169:210559...219930
NR annotation: KAJ7389823.1, hypothetical protein OS493_028792 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PFM4	Endoplasmic reticulum junction formation protein lunapark-B OS=Danio rerio OX=7955 GN=lnpkb PE=2 SV=2
Q7TQ95	Endoplasmic reticulum junction formation protein lunapark OS=Mus musculus OX=10090 GN=Lnpk PE=1 SV=1
Q6DFJ8	Endoplasmic reticulum junction formation protein lunapark OS=Xenopus laevis OX=8355 GN=lnpk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006919 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10058 all species →	zinc_ribbon_10	Predicted integral membrane zinc-ribbon metal-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019273 all species →	Domain	Lunapark domain	Interproscan
IPR040115 all species →	Family	Lunapark family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22166 all species →	ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071782 all species →	Cellular Component	endoplasmic reticulum tubular network	Interproscan
GO:0071786 all species →	Biological Process	endoplasmic reticulum tubular network organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23292	LNPK; endoplasmic reticulum junction formation protein lunapark	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028792-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

98.4Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.96	18.34
polyp at pH7 6	18	18	11.69	15.83
coral polyp · control treatment	16	16	22.96	43.48
coral polyp · oil and dispersant treatment	16	16	22.01	43.88
coral polyp · oil treatment	16	16	21.80	44.08
coral polyp · dispersant treatment	16	16	18.03	98.43
Polyp	10	9	6.45	10.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.