Gene detail

Detailed information of OS493_028793-T1 in Lophelia pertusa

Genomic Location: scaffold_169:225036...229558
NR annotation: KAJ7389824.1, INO80 complex subunit D [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q566I1	INO80 complex subunit D OS=Xenopus laevis OX=8355 GN=ino80d PE=2 SV=1
Q66JY2	INO80 complex subunit D OS=Mus musculus OX=10090 GN=Ino80d PE=2 SV=4
Q53TQ3	INO80 complex subunit D OS=Homo sapiens OX=9606 GN=INO80D PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003964 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13891 all species →	zf-C3Hc3H	Potential DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025927 all species →	Domain	Potential DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16198 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18401	KANSL2; KAT8 regulatory NSL complex subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028793-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

49.5Max TPM

20.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.00	26.97
polyp at pH7 6	18	18	15.36	22.50
coral polyp · control treatment	16	16	23.00	37.66
coral polyp · oil and dispersant treatment	16	16	27.62	49.48
coral polyp · oil treatment	16	16	22.16	32.63
coral polyp · dispersant treatment	16	16	27.83	41.58
Polyp	10	9	7.48	14.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.