Gene detail

Detailed information of OS493_028801-T1 in Lophelia pertusa

Genomic Location: scaffold_169:297924...301301
NR annotation: KAJ7389832.1, Transient receptor putative cation channel sub M member 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7T1N0	Transient receptor potential cation channel subfamily M member-like 2 OS=Nematostella vectensis OX=45351 GN=TRPM2 PE=1 SV=1
Q9BW91	ADP-ribose pyrophosphatase, mitochondrial OS=Homo sapiens OX=9606 GN=NUDT9 PE=1 SV=1
Q5XIG0	ADP-ribose pyrophosphatase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Nudt9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001986 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_028801-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR039989 all species →	Family	ADP-ribose pyrophosphatase, mitochondrial	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13030 all species →	NUDIX HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0047631 all species →	Molecular Function	ADP-ribose diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028801-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028801-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

103.2Max TPM

38.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	45.34	71.22
polyp at pH7 6	18	18	31.44	54.08
coral polyp · control treatment	16	16	51.69	103.16
coral polyp · oil and dispersant treatment	16	16	44.78	79.47
coral polyp · oil treatment	16	16	37.39	53.65
coral polyp · dispersant treatment	16	16	35.73	82.62
Polyp	10	9	11.71	28.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.60
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.