Gene detail

Detailed information of OS493_028807-T1 in Lophelia pertusa

Genomic Location: scaffold_169:398370...414557
NR annotation: KAJ7389838.1, hypothetical protein OS493_028807 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U2Y6	Tuftelin-interacting protein 11 OS=Rattus norvegicus OX=10116 GN=Tfip11 PE=1 SV=1
Q9ERA6	Tuftelin-interacting protein 11 OS=Mus musculus OX=10090 GN=Tfip11 PE=1 SV=1
A4UMC6	Tuftelin-interacting protein 11 OS=Monodelphis domestica OX=13616 GN=TFIP11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004065 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045211 all species →	Family	TFP11/STIP/Ntr1	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329 all species →	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13103	TFIP11; tuftelin-interacting protein 11	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_028807-T1 global co-expression network