Gene detail

Detailed information of OS493_028813-T1 in Lophelia pertusa

Genomic Location: scaffold_169:482102...482782
NR annotation: KAJ7389844.1, Juxtaposed with another zinc finger protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86VZ6	Juxtaposed with another zinc finger protein 1 OS=Homo sapiens OX=9606 GN=JAZF1 PE=1 SV=2
Q80ZQ5	Juxtaposed with another zinc finger protein 1 OS=Mus musculus OX=10090 GN=Jazf1 PE=1 SV=2
Q5RDF5	Juxtaposed with another zinc finger protein 1 OS=Pongo abelii OX=9601 GN=JAZF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009194 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_028813-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051580 all species →	Family	Zinc finger and chromatin remodeling-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23057 all species →	JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19495	JAZF1; juxtaposed with another zinc finger protein 1	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028813-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

253.4Max TPM

58.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.18	34.27
polyp at pH7 6	18	18	27.57	42.73
coral polyp · control treatment	16	16	47.62	126.93
coral polyp · oil and dispersant treatment	16	16	64.88	93.35
coral polyp · oil treatment	16	16	37.84	54.83
coral polyp · dispersant treatment	16	16	162.31	253.41
Polyp	10	10	42.97	96.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	227.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	222.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	208.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	181.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	176.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	171.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	164.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	154.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	96.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	72.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	68.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.43
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.50

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.