Gene detail

Detailed information of OS493_028853-T1 in Lophelia pertusa

Genomic Location: scaffold_169:821357...824039
NR annotation: KAJ7389884.1, 10 kda heat shock protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61603	10 kDa heat shock protein, mitochondrial OS=Bos taurus OX=9913 GN=HSPE1 PE=3 SV=2
P61604	10 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPE1 PE=1 SV=2
P26772	10 kDa heat shock protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hspe1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007364 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00166 all species →	Cpn10	Chaperonin 10 Kd subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020818 all species →	Family	GroES chaperonin family	Interproscan
IPR018369 all species →	Conserved_site	Chaperonin GroES, conserved site	Interproscan
IPR037124 all species →	Homologous_superfamily	GroES chaperonin superfamily	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10772 all species →	10 KDA HEAT SHOCK PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0044183 all species →	Molecular Function	protein folding chaperone	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051085 all species →	Biological Process	chaperone cofactor-dependent protein refolding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04078	groES, HSPE1; chaperonin GroES	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028853-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

623.1Max TPM

196.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	101.28	149.32
polyp at pH7 6	18	18	140.11	204.08
coral polyp · control treatment	16	16	226.73	391.59
coral polyp · oil and dispersant treatment	16	16	294.45	623.07
coral polyp · oil treatment	16	16	193.05	292.70
coral polyp · dispersant treatment	16	16	214.81	507.00
Polyp	10	10	236.28	458.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	142.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	118.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	204.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	200.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	174.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	161.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	159.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	123.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	391.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	294.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	293.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	265.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	258.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	227.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	225.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	206.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	197.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	623.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	619.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	411.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	310.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	292.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	253.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	252.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	236.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	218.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	215.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	292.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	279.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	234.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	227.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	211.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	182.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	181.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	176.40
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	155.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	507.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	356.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	277.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	266.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	231.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	226.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	220.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	195.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	183.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	168.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	158.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	458.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	390.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	366.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	335.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	155.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	152.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	145.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	144.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	130.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	83.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.