Gene detail

Detailed information of OS493_028968-T1 in Lophelia pertusa

Genomic Location: scaffold_172:390516...392009
NR annotation: KAJ7370897.1, hypothetical protein OS493_028968 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B1AR13	CDGSH iron-sulfur domain-containing protein 3, mitochondrial OS=Mus musculus OX=10090 GN=Cisd3 PE=1 SV=1
P0C7P0	CDGSH iron-sulfur domain-containing protein 3, mitochondrial OS=Homo sapiens OX=9606 GN=CISD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003656 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09360 all species →	zf-CDGSH	Iron-binding zinc finger CDGSH type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018967 all species →	Domain	Iron-binding zinc finger, CDGSH type	Interproscan
IPR042216 all species →	Homologous_superfamily	MitoNEET, CDGSH iron-sulfur domain	Interproscan
IPR052950 all species →	Family	CDGSH iron-sulfur domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46491 all species →	CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0106034 all species →	Biological Process	protein maturation by [2Fe-2S] cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23886	CISD3; CDGSH iron-sulfur domain-containing protein 3	-	Transport	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_028968-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

20.8Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.56	7.62
polyp at pH7 6	18	16	5.97	16.18
coral polyp · control treatment	16	16	4.38	11.73
coral polyp · oil and dispersant treatment	16	16	3.24	10.92
coral polyp · oil treatment	16	16	3.60	5.69
coral polyp · dispersant treatment	16	16	2.44	7.11
Polyp	10	10	7.73	20.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.