Detailed information of OS493_028972-T1 in Lophelia pertusa

Genomic Location: scaffold_172:424012...426783
NR annotation: KAJ7370901.1, DNA repair protein RAD50 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001857 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_028972-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for OS493_028972-T1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR18867
all species →		RAD50Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000722
all species →		Biological Processtelomere maintenance via recombinationInterproscan
GO:0000794
all species →		Cellular Componentcondensed nuclear chromosomeInterproscan
GO:0003691
all species →		Molecular Functiondouble-stranded telomeric DNA bindingInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0007004
all species →		Biological Processtelomere maintenance via telomeraseInterproscan
GO:0030870
all species →		Cellular ComponentMre11 complexInterproscan
GO:0032508
all species →		Biological ProcessDNA duplex unwindingInterproscan
GO:0043047
all species →		Molecular Functionsingle-stranded telomeric DNA bindingInterproscan
GO:0051880
all species →		Molecular FunctionG-quadruplex DNA bindingInterproscan
GO:0070192
all species →		Biological Processchromosome organization involved in meiotic cell cycleInterproscan
GO:0090305
all species →		Biological Processobsolete nucleic acid phosphodiester bond hydrolysisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_028972-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_028972-T1 global co-expression network
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