Gene detail

Detailed information of OS493_028982-T1 in Lophelia pertusa

Genomic Location: scaffold_172:456757...461138
NR annotation: KAJ7370908.1, hypothetical protein OS493_028982 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_028982-T1

ATGGCTTCGCACTCAACTGCAACAGACTGGCAGTCTAAAATCCTAAAGAAAGAGTACCAGAACTGGCTGGCTGTCGGCCATGCCCTCTCCTTGATGTGCGATGGGGTAAGGCCGTACATCGAGAGAGAGATGAAAGTGTTCCATCAAGCTCTGCTGGCCAATCTTGCCACTGTACCCCCTTGTACTTGCCCTAGGCCTCCGAAACACGGTTGCGCCTGGGCTGCACAACTTACACGGTGCCACATAGGAGGAAAACCAAATTCTCCTAAGTGGCATCAAAGCGACTCCAGCAAATGGACAGATCCTAACCAAGGTTACTGGGAGGTGGCCAAACTCTTCATGTCTGATTTGGGGCCTAGTAAAGCTACCGTCGTGGACGCGAGCACTACAGACTGCACAGGGTTAACCAACCTCATGTTTTGGTGCTGTCATTTTCGTGTTCAAGTGCACCTCGTTAAAGCCGTGCAGGAGACGCGCAATACAAAATGGGGGCACGCTGCAAGACAGGAACTGACAGATGGAGAAAAGGCAGATGCCTTGACAGCGATACGGAACCTTCTTCAAGATCGAGAGCTAGATGCTGACAATAACGCCAAAGCAGCCCTTGCAGAGATAGACTTAATGGAGAAGGACTTTGATGCACGAAGTATTGAGAGAAAAGTACTTGCGGATTTTCAAGTGACAGTCTGTAGTCAACTGGATGGTATTGATGGTGAGATGAAAGACTTAAAGAGAAACTGCAGAAATGAAAGCAACGAGGTACAAAAGAAACTGTCAAGCTTAGAAATCTGTCAAACTAACGAATTGAAACTTTTGCAAAGTATCGACGACAGAATGGAGGAGGAGAAGATACGGAATATTTCATGTGCCAAGCAAGTTTCAAACCTTGCAAGATGGGCGTTCAGGAGAACCAAACAATTTCTTGTCGGAAACCTTCGTAGCTTGAACACCAAATCCCTCGCAGTTTGGATGGTTATAATGATACTTATGGGGTGCTTTAGATGTTTAAGCCACAATTCCTACAATGATGGATGCCCGTTGGAAGGTGGAAGTGTTCCTTTTGACACTAAGGAGTTTAATTTTACAAGCTACTTGAACGCTGCCCGAGAAAGCTTCACAGGACGCTTTTGGCTTTACAATGAATTGGAGTCGCTTGTTATGAAACAAGACAGTGCTGGTGGGGTTGTGGTGGTTGGTGAACCAGGGACTGGGAAGTCTGCACTGTCCGCCCAGCTGATTTGTTCCCGTTCATCCAATTCCTTCATTCACAAGAGAATCATTGGTTATCATTTATGCAAGTATTCAGACAAGGCAACGCAAGACCCTGGTCGATTTGTTCGCAATTTAGTCGATTTGATGGCCAGAGGAGTTCCAGAATATGGAGTACTGGTTTCCAATAGTTCGTTTATCCTTAACATTCTTGAACGAAGCTGTTTGAGAGATCCTTACGAATGTTTTGAACAAGCTGTTGTGGCTCCATTGTGGCAGCTAAAGAATGACCTGCAATATTATTTTATTGTTATTGATGCATTGGATGAATGCTCTTCTGACGACGGTGGAATTGCAATAGTTCAATTTATAGAAAAAACGTTCAAGAGGCTTCCGAAATGGATACGACTTGTAATGACATCTCGTAACGACTCCAATGTACTAAAGCGTTTCAGCAATATTCCCAAAATGCATTTGTCTTCCACAGATGAAAGGAACTTGCAAGACATCGAGATTTTTATAGCCACGAAACTATTTGAAGATGCACCTATTCTGGAAAGGTTAAAAGTTATGTTAGGTTTCATCAGTGGTGAAGAAATTTCCTACCTGACAAACAAGTTATTGAGTCAAAGTCAAGGAAACTTCCTTTTCGTGAAAGAAATGTTCCATTTCTGGAAAGATGACTGGAACAATCAAGTAGACTTTAACCAGCTCCCGAAAACAATCGGTGGTATTTACGAGAGCTACTTGAGGAGAGTTTATGGATCAAGAGAGAAGTTCAAACCTGCTCTGGCAGTACTAGAGGTTATGGTAGCAGCCTTTGAACCTATGCAGATTGATCGTTTGTTCCAAATTTTAAAACTTCAGGAAAAGATTGACTATGAATATGACTTTGTCTATGCTTTGAAAGGACTGTCGCATTTTATCAGATATAGAGAAGACAACACCATCACTATTTTTCACCTTTCCTTTATTGAGTGGCTGACCAGCAGCGTAAACCTTGGAAACCCCTACTATGTCAGTCGGAGCCATGGTCACAGGCGCCTAGCGGAGCACTACTTGAGTGTTATCAAAAAGGCTCAAAATTCGTCTATGGATATTTACCGTCTAGCACAGCACGTTAGCTTTGAGGAAGGTGACGACAATCACCTCGAGGAGTTCGAGAACATCAACGCCTCGTACATAAATGCCACCATTGACAGGGATAACAGGACGCTTCTTCATCTCGCTGCAGCCAATAGCAACAGAAAAATACTTCAGATACTTATTCCAGCGTTTGAAAGCATTGATTGTGAGGACAACTATGGGTTTACCCCAGGATTTGTTGCTGCGATGAACGGTCTTACAGAAAACGTAGAGCTCCTCATAAGTAAAGGAGCCGATATCAATCACCGAACAAAGCCACCACCTTCTCCACTATTGAATGATGCTGTCGTTTTGGGTGATCCTATTGAACGCGCCAAAACAGCTTTCTGGAATTCTAGTATGATGCATGCTGCTGCTTCGGGAGGTCATATTGATGTAGTTCAAGCCTTACTGAAGAGAAATGCTTCGTTTCGTGATGTAAATGGTGTCAACCTGACGGCCATTCAACTGGCAGCACAGAATGGACATGTAAAAGTTGTTCAGGTTTTGTACAAACGTGGAGCGCAAGTAGATCACGTCTCACTTCAACATGCAGCTGCCGGAGGTCACACAGACGTTGTGAAGTTTCTTTTAAAGACTGGTGTAGTAGATACCTGCATGCGATGTGATGGATCATTTTATTGGCTTGCAAACAGGGTCCGATATCAAACAAAACTTAGTTTTAACTCCAGCGATGTCGTGGACTATATTTTGTCAGACGATATGTATAAAATCCTATGCCAAAGTGCACTTCATTTGGCTGTAGCTAGAAACCACACAGAAGTAGCCAAACTGTTGTTATCCCAGGAAGAAAAGACAGTTCATTGCACTGACTTCACAGATCGAACTCCACTTCACGAGGCTGTCAGGCAAAACCATGTGGAGATGGCAGACGTGCTTATTCAGAGTGGGGCACGAATTTCTCAGAAGTGCAGACTGTTTCAGAATTTATCCTTTTCTGACAACCGCACGATGAAAGAATGCGAAACGAAGTATGACTTTCTAAGCATAAGTGAAGAAGTAGAATACAATAAAGATCTATGCCACTGTGGCTCGACACCATTGCTACTGGCTGCAAGGTACGGTCATACTGAGGTAGGGTCCCTACTTTTGCGATACGGTGCAAAAGCTCACGACCAGGATTGTCAGGGTGCCACACCACTTCATGTAGCTGCATGTCATGGGCATTACAGATTTATTAGATGGCTTATTTCTCAAAGACCGTCACTTCATGTCAACAGTAGAAGTCAAAACCAGTCGACACCACTACACAGTGGTGCTATTTGTAAGATCAACAAGGCCATCAAACCCTTGATAGACATGGGAGCTAGCATTTATGATACTGATCAGTACGAAATGACTCCGTTACATTACTCTGTTCTTAACGCTTTTGAAAATATTGATGTGGTTCTCGGCCTCAGCGAGATATTCAATGAACCTTACGTGCCTAAAGCTGTCAGAAATTACCGAATCAACAGATGA

Transcript

OS493_028982-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULJ7	Ankyrin repeat domain-containing protein 50 OS=Homo sapiens OX=9606 GN=ANKRD50 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000627 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15112 all species →	DUF4559	Domain of unknown function (DUF4559)	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027897 all species →	Family	Protein of unknown function DUF4559	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24126 all species →	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_028982-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_028982-T1 global co-expression network