Detailed information of OS493_028991-T1 in Lophelia pertusa

Genomic Location: scaffold_172:501756...508470
NR annotation: KAJ7370917.1, Vacuolar protein sorting-associated protein 52 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8N1B4Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens OX=9606 GN=VPS52 PE=1 SV=1
Q8C754Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus OX=10090 GN=Vps52 PE=1 SV=1
O55166Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus OX=10116 GN=Vps52 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003151 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04129
all species →		Vps52_CCVps52/Sac2 family, coiled-coilRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048319
all species →		DomainVps52, coiled-coil domainInterproscan
IPR007258
all species →		FamilyVps52Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14190
all species →		SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000938
all species →		Cellular ComponentGARP complexInterproscan
GO:0006896
all species →		Biological ProcessGolgi to vacuole transportInterproscan
GO:0007041
all species →		Biological Processlysosomal transportInterproscan
GO:0019905
all species →		Molecular Functionsyntaxin bindingInterproscan
GO:0032456
all species →		Biological Processendocytic recyclingInterproscan
GO:0042147
all species →		Biological Processretrograde transport, endosome to GolgiInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_028991-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_028991-T1 global co-expression network
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