Gene detail

Detailed information of OS493_029062-T1 in Lophelia pertusa

Genomic Location: scaffold_173:485127...497573
NR annotation: KAJ7354953.1, hypothetical protein OS493_029062 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006627 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR042318 all species →	Family	Consortin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28581 all species →	CONSORTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030133 all species →	Cellular Component	transport vesicle	Interproscan
GO:0042998 all species →	Biological Process	positive regulation of Golgi to plasma membrane protein transport	Interproscan
GO:0071253 all species →	Molecular Function	connexin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029062-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029062-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

24.0Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.72	19.60
polyp at pH7 6	18	18	11.14	16.18
coral polyp · control treatment	16	16	13.34	24.02
coral polyp · oil and dispersant treatment	16	16	12.69	18.67
coral polyp · oil treatment	16	16	12.61	19.83
coral polyp · dispersant treatment	16	16	7.67	14.98
Polyp	10	9	4.38	7.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.