Gene detail

Detailed information of OS493_029064-T1 in Lophelia pertusa

Genomic Location: scaffold_173:512872...520225
NR annotation: KAJ7354955.1, positive regulation of anterograde axonal transport of mitochondrion [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TYB5	Fasciculation and elongation protein zeta-2 OS=Mus musculus OX=10090 GN=Fez2 PE=2 SV=1
Q9UHY8	Fasciculation and elongation protein zeta-2 OS=Homo sapiens OX=9606 GN=FEZ2 PE=1 SV=2
P97578	Fasciculation and elongation protein zeta-2 OS=Rattus norvegicus OX=10116 GN=Fez2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008312 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07763 all species →	FEZ	FEZ-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011680 all species →	Family	Fasciculation and elongation protein zeta, FEZ	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12394 all species →	ZYGIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25668	FEZ2; fasciculation and elongation protein zeta-2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029064-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

16.7Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.44	6.38
polyp at pH7 6	18	16	4.49	10.84
coral polyp · control treatment	16	16	6.62	16.66
coral polyp · oil and dispersant treatment	16	16	5.38	13.71
coral polyp · oil treatment	16	16	6.00	8.07
coral polyp · dispersant treatment	16	15	2.75	5.87
Polyp	10	8	2.79	5.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.