Gene detail

Detailed information of OS493_029065-T1 in Lophelia pertusa

Genomic Location: scaffold_173:520452...523618
NR annotation: KAJ7354956.1, N-alpha-acetyltransferase 30 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q147X3	N-alpha-acetyltransferase 30 OS=Homo sapiens OX=9606 GN=NAA30 PE=1 SV=1
Q8CES0	N-alpha-acetyltransferase 30 OS=Mus musculus OX=10090 GN=Naa30 PE=1 SV=2
Q0IHH1	N-alpha-acetyltransferase 30 OS=Xenopus laevis OX=8355 GN=naa30 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008266 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR044542 all species →	Family	N-alpha-acetyltransferase 30-like	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45896 all species →	N-ALPHA-ACETYLTRANSFERASE 30	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0004596 all species →	Molecular Function	peptide alpha-N-acetyltransferase activity	Interproscan
GO:0017196 all species →	Biological Process	N-terminal peptidyl-methionine acetylation	Interproscan
GO:0031417 all species →	Cellular Component	NatC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00670	NAA30, MAK3; N-alpha-acetyltransferase 30	EC:2.3.1.256	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029065-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

71.2Max TPM

22.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.78	32.50
polyp at pH7 6	18	18	26.68	47.18
coral polyp · control treatment	16	16	23.95	42.38
coral polyp · oil and dispersant treatment	16	16	26.55	71.22
coral polyp · oil treatment	16	16	24.23	30.99
coral polyp · dispersant treatment	16	16	12.09	20.74
Polyp	10	10	24.57	39.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.76
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.81
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.