Gene detail

Detailed information of OS493_029070-T1 in Lophelia pertusa

Genomic Location: scaffold_173:587022...600762
NR annotation: KAJ7354961.1, spermatogenesis-associated protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008049 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15244 all species →	HSD3	Spermatogenesis-associated protein 7, or HSD3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029357 all species →	Family	Spermatogenesis-associated protein 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14917 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029070-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029070-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.3Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.85	22.32
polyp at pH7 6	18	18	7.83	18.86
coral polyp · control treatment	16	16	13.11	24.68
coral polyp · oil and dispersant treatment	16	16	10.03	18.66
coral polyp · oil treatment	16	16	12.14	27.28
coral polyp · dispersant treatment	16	16	8.17	14.79
Polyp	10	10	7.86	12.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.76
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.36

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.