Gene detail

Detailed information of OS493_029071-T1 in Lophelia pertusa

Genomic Location: scaffold_173:602249...603661
NR annotation: KAJ7354962.1, hypothetical protein OS493_029071 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z2L6	Multiple inositol polyphosphate phosphatase 1 OS=Mus musculus OX=10090 GN=Minpp1 PE=1 SV=3
O35217	Multiple inositol polyphosphate phosphatase 1 OS=Rattus norvegicus OX=10116 GN=Minpp1 PE=1 SV=3
Q9UNW1	Multiple inositol polyphosphate phosphatase 1 OS=Homo sapiens OX=9606 GN=MINPP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001803 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR016274 all species →	Family	Histidine acid phosphatase, eukaryotic	Interproscan
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20963 all species →	MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0052745 all species →	Molecular Function	inositol phosphate phosphatase activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03103	MINPP1; multiple inositol-polyphosphate phosphatase / 2,3-bisphosphoglycerate 3-phosphatase	EC:3.1.3.62 EC:3.1.3.80	Inositol phosphate metabolism	ko00562	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029071-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

7.9Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.69	7.58
polyp at pH7 6	18	16	3.35	6.25
coral polyp · control treatment	16	16	3.26	7.72
coral polyp · oil and dispersant treatment	16	16	2.36	7.89
coral polyp · oil treatment	16	16	2.95	5.21
coral polyp · dispersant treatment	16	16	1.59	2.79
Polyp	10	9	3.19	6.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.