Gene detail

Detailed information of OS493_029092-T1 in Lophelia pertusa

Genomic Location: scaffold_174:116479...118257
NR annotation: KAJ7325668.1, hypothetical protein OS493_029092 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010681 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38926 all species →	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10275	FBXL9, LRRC29; F-box and leucine-rich repeat protein 9	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029092-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

14.6Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.58	8.13
polyp at pH7 6	18	18	5.24	7.93
coral polyp · control treatment	16	16	7.07	14.60
coral polyp · oil and dispersant treatment	16	16	4.61	10.26
coral polyp · oil treatment	16	16	5.93	8.00
coral polyp · dispersant treatment	16	16	2.31	4.68
Polyp	10	10	7.13	12.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.