Gene detail

Detailed information of OS493_029199-T1 in Lophelia pertusa

Genomic Location: scaffold_175:428794...435530
NR annotation: KAJ7389777.1, hypothetical protein OS493_029199 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C907	Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana OX=3702 GN=GDPD5 PE=2 SV=1
Q9SD81	Glycerophosphodiester phosphodiesterase GDPD6 OS=Arabidopsis thaliana OX=3702 GN=GDPD6 PE=2 SV=1
F4JEQ1	Glycerophosphodiester phosphodiesterase GDPDL5 OS=Arabidopsis thaliana OX=3702 GN=GDPDL5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03009 all species →	GDPD	Glycerophosphoryl diester phosphodiesterase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030395 all species →	Domain	Glycerophosphodiester phosphodiesterase domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43620 all species →	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0008889 all species →	Molecular Function	glycerophosphodiester phosphodiesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029199-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029199-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

34.9Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.70	9.95
polyp at pH7 6	18	13	0.83	2.95
coral polyp · control treatment	16	14	7.47	22.91
coral polyp · oil and dispersant treatment	16	16	3.14	9.54
coral polyp · oil treatment	16	16	6.34	23.28
coral polyp · dispersant treatment	16	16	6.48	27.40
Polyp	10	10	6.78	34.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.