Gene detail

Detailed information of OS493_029208-T1 in Lophelia pertusa

Genomic Location: scaffold_175:529699...534890
NR annotation: KAJ7389786.1, Glutathione-specific gamma-glutamylcyclotransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3J5	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Mus musculus OX=10090 GN=Chac1 PE=1 SV=2
Q5SPB6	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Danio rerio OX=7955 GN=chac1 PE=3 SV=1
Q9BUX1	Glutathione-specific gamma-glutamylcyclotransferase 1 OS=Homo sapiens OX=9606 GN=CHAC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002270 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04752 all species →	ChaC	ChaC-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013024 all species →	Domain	Gamma-glutamyl cyclotransferase-like	Interproscan
IPR006840 all species →	Family	Glutathione-specific gamma-glutamylcyclotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12192 all species →	CATION TRANSPORT PROTEIN CHAC-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003839 all species →	Molecular Function	gamma-glutamylcyclotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0061928 all species →	Molecular Function	glutathione specific gamma-glutamylcyclotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029208-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029208-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

75.2Max TPM

13.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.37	16.16
polyp at pH7 6	18	18	8.03	15.32
coral polyp · control treatment	16	16	13.92	24.50
coral polyp · oil and dispersant treatment	16	15	22.31	75.21
coral polyp · oil treatment	16	16	15.42	31.05
coral polyp · dispersant treatment	16	16	17.04	41.21
Polyp	10	9	9.38	28.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.14
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.