Gene detail

Detailed information of OS493_029216-T1 in Lophelia pertusa

Genomic Location: scaffold_175:625149...640739
NR annotation: KAJ7389793.1, hypothetical protein OS493_029216 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR045258 all species →	Family	ArfGAP ACAP1/2/3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23180 all species →	CENTAURIN/ARF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029216-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029216-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

39.9Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.99	19.52
polyp at pH7 6	18	18	11.96	16.80
coral polyp · control treatment	16	16	16.43	39.89
coral polyp · oil and dispersant treatment	16	16	15.44	25.47
coral polyp · oil treatment	16	16	13.78	19.99
coral polyp · dispersant treatment	16	16	12.88	21.66
Polyp	10	10	7.33	11.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.12
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.73
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.