Gene detail

Detailed information of OS493_029236-T1 in Lophelia pertusa

Genomic Location: scaffold_176:70819...78768
NR annotation: KAJ7383271.1, Alpha-tubulin N-acetyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58CX6	Alpha-tubulin N-acetyltransferase 1 OS=Bos taurus OX=9913 GN=ATAT1 PE=2 SV=1
B3RNE8	Alpha-tubulin N-acetyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53139 PE=3 SV=1
Q767K7	Alpha-tubulin N-acetyltransferase 1 OS=Sus scrofa OX=9823 GN=ATAT1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006257 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05301 all species →	Acetyltransf_16	GNAT acetyltransferase, Mec-17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007965 all species →	Domain	Gcn5-related N-acetyltransferase (GNAT) domain, ATAT-type	Interproscan
IPR038746 all species →	Family	Alpha-tubulin N-acetyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12327 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0019799 all species →	Molecular Function	tubulin N-acetyltransferase activity	Interproscan
GO:0071929 all species →	Biological Process	alpha-tubulin acetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19573	ATAT1, MEC17; alpha-tubulin N-acetyltransferase 1	EC:2.3.1.108	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029236-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

16.5Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.99	7.42
polyp at pH7 6	18	14	2.61	6.67
coral polyp · control treatment	16	16	4.71	16.54
coral polyp · oil and dispersant treatment	16	15	2.20	3.79
coral polyp · oil treatment	16	16	4.06	8.35
coral polyp · dispersant treatment	16	15	2.20	4.11
Polyp	10	8	1.74	3.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.