Gene detail

Detailed information of OS493_029315-T1 in Lophelia pertusa

Genomic Location: scaffold_177:308285...314973
NR annotation: KAJ7377415.1, Eukaryotic translation initiation factor 3 subunit G [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SKE9	Eukaryotic translation initiation factor 3 subunit G OS=Nematostella vectensis OX=45351 GN=v1g171563 PE=3 SV=1
Q6DRC4	Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio OX=7955 GN=eif3g PE=1 SV=1
Q6DJI8	Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus laevis OX=8355 GN=eif3g-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007965 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12353 all species →	eIF3g	Eukaryotic translation initiation factor 3 subunit G	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR024675 all species →	Domain	Eukaryotic translation initiation factor 3 subunit G, N-terminal	Interproscan
IPR034240 all species →	Domain	eIF3G, RNA recognition motif	Interproscan
IPR017334 all species →	Family	Eukaryotic translation initiation factor 3 subunit G	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03248	EIF3G; translation initiation factor 3 subunit G	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029315-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

266.7Max TPM

99.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	109.46	154.74
polyp at pH7 6	18	18	128.87	266.67
coral polyp · control treatment	16	16	92.60	118.49
coral polyp · oil and dispersant treatment	16	16	83.92	103.89
coral polyp · oil treatment	16	16	91.57	125.21
coral polyp · dispersant treatment	16	16	62.31	108.87
Polyp	10	10	132.66	205.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	138.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	126.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	266.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	227.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	126.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.27
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	101.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	205.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	176.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	165.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	156.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	123.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	120.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	119.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	95.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	89.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	73.50

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.