Detailed information of OS493_029316-T1 in Lophelia pertusa

Genomic Location: scaffold_177:315154...318389
NR annotation: KAJ7377416.1, hypothetical protein OS493_029316 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5T28028S rRNA (uridine-N(3))-methyltransferase OS=Homo sapiens OX=9606 GN=SPOUT1 PE=1 SV=3
Q3UHX928S rRNA (uridine-N(3))-methyltransferase OS=Mus musculus OX=10090 GN=Spout1 PE=1 SV=1
A1Z83028S rRNA (uridine-N(3))-methyltransferase OS=Drosophila melanogaster OX=7227 GN=ptch PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005477 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02598
all species →		Methyltrn_RNA_3Putative RNA methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003750
all species →		FamilyPutative RNA methyltransferaseInterproscan
IPR029028
all species →		Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR029026
all species →		Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12150
all species →		CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for OS493_029316-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09142SPOUT1; methyltransferaseEC:2.1.1.-
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_029316-T1 global co-expression network
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