Detailed information of OS493_029321-T1 in Lophelia pertusa

Genomic Location: scaffold_177:336633...345616
NR annotation: KAJ7377421.1, Valine--tRNA ligase, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P49696Valine--tRNA ligase OS=Takifugu rubripes OX=31033 GN=vars1 PE=3 SV=1
Q9Z1Q9Valine--tRNA ligase OS=Mus musculus OX=10090 GN=Vars1 PE=1 SV=1
P26640Valine--tRNA ligase OS=Homo sapiens OX=9606 GN=VARS1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002985 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00133
all species →		tRNA-synt_1tRNA synthetases class I (I, L, M and V)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001412
all species →		Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR009008
all species →		Homologous_superfamilyValyl/Leucyl/Isoleucyl-tRNA synthetase, editing domainInterproscan
IPR002303
all species →		FamilyValine-tRNA ligaseInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR002300
all species →		DomainAminoacyl-tRNA synthetase, class IaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11946
all species →		VALYL-TRNA SYNTHETASESInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0002161
all species →		Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0004832
all species →		Molecular Functionvaline-tRNA ligase activityInterproscan
GO:0006438
all species →		Biological Processvalyl-tRNA aminoacylationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_029321-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_029321-T1 global co-expression network
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