Gene detail

Detailed information of OS493_029361-T1 in Lophelia pertusa

Genomic Location: scaffold_178:58191...60273
NR annotation: KAJ7370818.1, protein depalmitoylation [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VWZ2	Lysophospholipase-like protein 1 OS=Homo sapiens OX=9606 GN=LYPLAL1 PE=1 SV=3
Q5R8C2	Lysophospholipase-like protein 1 OS=Pongo abelii OX=9601 GN=LYPLAL1 PE=2 SV=3
Q3UFF7	Lysophospholipase-like protein 1 OS=Mus musculus OX=10090 GN=Lyplal1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008569 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02230 all species →	Abhydrolase_2	Phospholipase/Carboxylesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003140 all species →	Domain	Phospholipase/carboxylesterase/thioesterase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR050565 all species →	Family	AB hydrolase superfamily domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10655 all species →	LYSOPHOSPHOLIPASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0002084 all species →	Biological Process	protein depalmitoylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008474 all species →	Molecular Function	palmitoyl-(protein) hydrolase activity	Interproscan
GO:0052689 all species →	Molecular Function	carboxylic ester hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029361-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029361-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

8.6Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.33	5.68
polyp at pH7 6	18	16	2.96	8.56
coral polyp · control treatment	16	16	2.16	5.38
coral polyp · oil and dispersant treatment	16	14	0.96	2.25
coral polyp · oil treatment	16	16	2.03	3.52
coral polyp · dispersant treatment	16	14	0.75	2.08
Polyp	10	9	3.34	7.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.