Gene detail

Detailed information of OS493_029363-T1 in Lophelia pertusa

Genomic Location: scaffold_178:67114...72779
NR annotation: KAJ7370820.1, CXXC-type zinc finger protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CWW7	CXXC-type zinc finger protein 1 OS=Mus musculus OX=10090 GN=Cxxc1 PE=1 SV=1
Q9P0U4	CXXC-type zinc finger protein 1 OS=Homo sapiens OX=9606 GN=CXXC1 PE=1 SV=2
Q5EA28	CXXC-type zinc finger protein 1 OS=Bos taurus OX=9913 GN=CXXC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002227 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12269 all species →	CpG_bind_C	CpG binding protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022056 all species →	Domain	CpG binding protein, C-terminal	Interproscan
IPR037869 all species →	Family	Spp1/CFP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46174 all species →	CXXC-TYPE ZINC FINGER PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0048188 all species →	Cellular Component	Set1C/COMPASS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029363-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029363-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.1Max TPM

11.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.07	16.03
polyp at pH7 6	18	18	10.29	16.37
coral polyp · control treatment	16	16	14.99	31.12
coral polyp · oil and dispersant treatment	16	16	9.98	25.56
coral polyp · oil treatment	16	16	14.91	28.93
coral polyp · dispersant treatment	16	16	7.52	16.22
Polyp	10	10	14.09	24.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.03
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.