Gene detail

Detailed information of OS493_029371-T1 in Lophelia pertusa

Genomic Location: scaffold_178:184770...208241
NR annotation: KAJ7370828.1, hypothetical protein OS493_029371 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UZV7	Endosome/lysosome-associated apoptosis and autophagy regulator family member 2 OS=Mus musculus OX=10090 GN=Elapor2 PE=1 SV=1
A8MWY0	Endosome/lysosome-associated apoptosis and autophagy regulator family member 2 OS=Homo sapiens OX=9606 GN=ELAPOR2 PE=1 SV=2
Q6UXG2	Endosome/lysosome-associated apoptosis and autophagy regulator 1 OS=Homo sapiens OX=9606 GN=ELAPOR1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002214 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_029371-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR039181 all species →	Family	EIG121-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22727 all species →	PROTEIN CBG13728	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029371-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029371-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

99.9Max TPM

48.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.32	73.51
polyp at pH7 6	18	18	41.57	65.33
coral polyp · control treatment	16	16	61.26	99.86
coral polyp · oil and dispersant treatment	16	16	54.37	86.27
coral polyp · oil treatment	16	16	53.21	96.64
coral polyp · dispersant treatment	16	16	48.73	70.85
Polyp	10	10	30.19	49.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.59
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.37
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	48.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	48.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	35.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.