Gene detail

Detailed information of OS493_029385-T1 in Lophelia pertusa

Genomic Location: scaffold_178:447240...448481
NR annotation: KAJ7370841.1, Putative beta-lactamase-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8MY62	Putative beta-lactamase-like 1 OS=Homo sapiens OX=9606 GN=LACTBL1 PE=1 SV=2
Q7KWX1	Beta-lactamase-like protein 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0276787 PE=3 SV=1
P0AD71	D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH OS=Escherichia coli O157:H7 OX=83334 GN=ampH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR051478 all species →	Family	Beta-lactamase-like Antibiotic Biosynthesis/Resistance	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22935 all species →	PENICILLIN-BINDING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_029385-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029385-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029385-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

71.1Max TPM

11.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.40	16.71
polyp at pH7 6	18	18	5.14	13.50
coral polyp · control treatment	16	16	16.10	44.31
coral polyp · oil and dispersant treatment	16	16	16.43	71.07
coral polyp · oil treatment	16	16	18.38	43.63
coral polyp · dispersant treatment	16	16	15.64	49.66
Polyp	10	9	2.31	6.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.97
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.