Gene detail

Detailed information of OS493_029418-T1 in Lophelia pertusa

Genomic Location: scaffold_178:797223...804102
NR annotation: KAJ7370874.1, Dipeptidyl peptidase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHL4	Dipeptidyl peptidase 2 OS=Homo sapiens OX=9606 GN=DPP7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001432 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029418-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

14.9Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.96	10.97
polyp at pH7 6	18	15	6.38	14.90
coral polyp · control treatment	16	13	0.90	5.10
coral polyp · oil and dispersant treatment	16	16	1.17	8.29
coral polyp · oil treatment	16	14	0.79	2.62
coral polyp · dispersant treatment	16	14	0.57	1.63
Polyp	10	9	1.42	2.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.