Detailed information of OS493_029434-T1 in Lophelia pertusa

Genomic Location: scaffold_179:217430...226764
NR annotation: KAJ7354877.1, Putative 28S rRNA (cytosine-C(5))-methyltransferase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K4F628S rRNA (cytosine-C(5))-methyltransferase OS=Mus musculus OX=10090 GN=Nsun5 PE=1 SV=2
Q96P1128S rRNA (cytosine-C(5))-methyltransferase OS=Homo sapiens OX=9606 GN=NSUN5 PE=1 SV=2
O1403925S rRNA (cytosine-C(5))-methyltransferase rcm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rcm1 PE=3 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004974 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21153
all species →		NSUN5_NNOL1/NOP2/Sun domain family member 5, N-terminal domainDomainInterproscan
PF21148
all species →		NSUN5_fdxn-likeNOL1/NOP2/Sun domain family member 5, ferredoxin-like domainDomainInterproscan
PF01189
all species →		Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048889
all species →		DomainNSUN5/RCM1, N-terminal domainInterproscan
IPR023267
all species →		FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR001678
all species →		DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR049561
all species →		DomainNOL1/NOP2/NSUN 5/7, ferredoxin-like domainInterproscan
IPR049560
all species →		DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22807
all species →		NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001510
all species →		Biological ProcessRNA methylationInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0008173
all species →		Molecular FunctionRNA methyltransferase activityInterproscan
GO:0070475
all species →		Biological ProcessrRNA base methylationInterproscan
GO:0008168
all species →		Molecular Functionmethyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15264NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferaseEC:2.1.1.311
Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_029434-T1 global co-expression network
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