Gene detail

Detailed information of OS493_029438-T1 in Lophelia pertusa

Genomic Location: scaffold_179:274407...274943
NR annotation: KAJ7354881.1, Putative diacetyl reductase [(R)-acetoin forming] 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q561X9	Dehydrogenase/reductase SDR family member 6 OS=Danio rerio OX=7955 GN=bdh2 PE=2 SV=1
C1C4R8	Dehydrogenase/reductase SDR family member 6 OS=Aquarana catesbeiana OX=8400 GN=bdh2 PE=2 SV=1
Q3KPT7	Dehydrogenase/reductase SDR family member 6 OS=Xenopus laevis OX=8355 GN=bdh2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051122 all species →	Family	Short-chain dehydrogenase/reductase superfamily enzyme	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR003560 all species →	Family	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43477 all species →	DIHYDROANTICAPSIN 7-DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0008667 all species →	Molecular Function	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity	Interproscan
GO:0019290 all species →	Biological Process	siderophore biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029438-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029438-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

44.9Max TPM

14.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.13	29.56
polyp at pH7 6	18	18	15.19	31.40
coral polyp · control treatment	16	16	17.25	44.94
coral polyp · oil and dispersant treatment	16	16	14.26	26.88
coral polyp · oil treatment	16	16	16.67	35.76
coral polyp · dispersant treatment	16	16	15.74	30.96
Polyp	10	9	7.53	13.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.