Gene detail

Detailed information of OS493_029484-T1 in Lophelia pertusa

Genomic Location: scaffold_180:211444...220182
NR annotation: KAJ7325621.1, Thioredoxin reductase 2, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NNW7	Thioredoxin reductase 2, mitochondrial OS=Homo sapiens OX=9606 GN=TXNRD2 PE=1 SV=3
Q9JLT4	Thioredoxin reductase 2, mitochondrial OS=Mus musculus OX=10090 GN=Txnrd2 PE=1 SV=4
Q9N2I8	Thioredoxin reductase 2, mitochondrial OS=Bos taurus OX=9913 GN=TXNRD2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001632 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR012999 all species →	Active_site	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	Interproscan
IPR046952 all species →	Family	Glutathione reductase/thioredoxin reductase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42737 all species →	GLUTATHIONE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016668 all species →	Molecular Function	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Interproscan
GO:0004362 all species →	Molecular Function	glutathione-disulfide reductase (NADPH) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029484-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029484-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.5Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.23	11.14
polyp at pH7 6	18	18	6.75	8.42
coral polyp · control treatment	16	16	12.87	20.46
coral polyp · oil and dispersant treatment	16	16	9.96	16.24
coral polyp · oil treatment	16	16	10.26	15.62
coral polyp · dispersant treatment	16	16	9.86	17.95
Polyp	10	9	3.92	9.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.