Gene detail

Detailed information of OS493_029486-T1 in Lophelia pertusa

Genomic Location: scaffold_180:233158...251022
NR annotation: KAJ7325623.1, Anthrax toxin receptor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H6X2	Anthrax toxin receptor 1 OS=Homo sapiens OX=9606 GN=ANTXR1 PE=1 SV=2
Q0PMD2	Anthrax toxin receptor 1 OS=Rattus norvegicus OX=10116 GN=Antxr1 PE=1 SV=2
P58335	Anthrax toxin receptor 2 OS=Homo sapiens OX=9606 GN=ANTXR2 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005181 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF05587 all species →	Anth_Ig	Anthrax receptor extracellular domain	Domain	Interproscan
PF05586 all species →	Ant_C	Anthrax receptor C-terminus region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR008400 all species →	Domain	Anthrax toxin receptor, extracellular domain	Interproscan
IPR008399 all species →	Domain	Anthrax toxin receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16059 all species →	ANTHRAX TOXIN RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20909	ANTXR; anthrax toxin receptor	-	NOD-like receptor signaling pathway	ko04621	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029486-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

61.3Max TPM

23.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.95	33.45
polyp at pH7 6	18	18	21.37	35.77
coral polyp · control treatment	16	16	27.81	61.32
coral polyp · oil and dispersant treatment	16	16	29.23	58.16
coral polyp · oil treatment	16	16	27.00	40.78
coral polyp · dispersant treatment	16	16	21.41	42.80
Polyp	10	9	9.12	20.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.