Gene detail

Detailed information of OS493_029528-T1 in Lophelia pertusa

Genomic Location: scaffold_180:783667...787196
NR annotation: KAJ7325659.1, hypothetical protein OS493_029528 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F477	Lipid droplet-associated hydrolase OS=Gallus gallus OX=9031 GN=LDAH PE=2 SV=2
Q9H6V9	Lipid droplet-associated hydrolase OS=Homo sapiens OX=9606 GN=LDAH PE=1 SV=1
Q5R7E8	Lipid droplet-associated hydrolase OS=Pongo abelii OX=9601 GN=LDAH PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002322 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10230 all species →	LIDHydrolase	Lipid-droplet associated hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR019363 all species →	Family	Lipid droplet-associated hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13390 all species →	LIPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan
GO:0019915 all species →	Biological Process	lipid storage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029528-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029528-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

8.7Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.75	8.12
polyp at pH7 6	18	18	3.22	5.72
coral polyp · control treatment	16	16	3.91	6.71
coral polyp · oil and dispersant treatment	16	15	2.36	5.09
coral polyp · oil treatment	16	16	2.86	5.48
coral polyp · dispersant treatment	16	16	1.88	5.48
Polyp	10	8	3.94	8.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.