Gene detail

Detailed information of OS493_029538-T1 in Lophelia pertusa

Genomic Location: scaffold_181:90848...111947
NR annotation: KAJ7389654.1, hypothetical protein OS493_029538 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_029538-T1

ATGTCGTCATCTACTCCTAATACCAAAGCAGATCTCAGCAAGACTAACTCAACCCTTGAAAATGAGATGTCCAGGCTTTTGTCGGAGAGGACAGAACTTGAGAACAGACTGTACCTGGCACAGCAGAGAGTTGAAGACCTGGAAAACAAATTCCAGTCCTTGTCACAAGAAAAAATGAGCCATGAATCCTCCATTGCTGATCTTCAAAAAGAAATCCAAGACTTGAGACAAGATAATGATCTGCTGCTCACAAAAATACAAGTAACTTCAACAACCAAATGTAACATTGAAAAACTAGAAGAGGAACTAAAAACAGTCAAGTTAAAACTTCAGGACAAGGAAGGGGTAATCTCTAGTCTTAATTTTGAACTGAGCTGTGCAGCCGAAAATTCAAGAGCTGATATTGAACTGGAACAGGAGAAAAACAAGGCTCTCAATGAAAGAATTGCTTACTTAGAAAGGACAGTTTCAGAGGTGACAAGTGACAGAGATGAGGTGGAAGAAGCAAACCAAACACTCCATGCGTTGGTTGCACATCTGAGAAGAGAGAATATTGAAATGAGAGCTAAACTGGATGAAACGGAAGAAAAATTAGAGGTTATCCGTGACAAGATGAAAACCAGCATAAATGAAAGTGAGAACAGGATACATGCTCTTGAAGAAATGTTGAGCAAGGAGATACTGAAGAGTCAAGAGTTTGGTGACAAGTTGGAGTGTTCCTTGAAGCAAAGTGGAGAGAATTTTAGCCAAGTGCAGTCTAGAATTGTTCAGCTTCAAGAGACAAATGAAAACCTACAAAACACAAATCATGATTTGGAAGCTAAACTGTTCGAGTTAATTGAGAAAGAACAATATTCAGAAGAAAGGTCAAGATGTTTGTCAGTGGAGAAATTTTCACTGGAGAGCAGACTTCACAAGTGTGAGAGCGACTATGAACAGCGCCTATCTATTGCTAATGACCAGGTGGAATCACTACAGCAAGAGCTTCAAAGGTATGAAGAGATGATGACAGATAACATGAGATCACTGACCGACAAATATCAAGATCTGGAGGAATCTTACACTTGCTTTCAATCCGAGGCAGAAAAAGAGAAGAGTTTGATTTTAGCTGAGTTACAAGTCACTAAACAGTCTCTCAAGAAAAGTCAACAGGAAAGTGATCAGCAACAAAACACCTGTGTATTCCTACAACAACAGAACGAACATCTGCAACAAGACTGTGATCAACGTGATCAACACGTAGAAAGTTTGAAGGCCGAAGTGGAATCTACAAAGGAAGAGCTGGCGAAACATGTGGAAGAAACAGAATTAAGCAAATCTTCTCTTAGAAAGACCCAAGACGAGGCACACAATACAATCAACGATCTTCACAAAAGAGAAGAAACTTTATCTCAGGAATTGCAACTCATGCTCAGCAATCGGAACAAGCAAGATGAAGAATTAGAAATGGTCAAAACCCAACTGGACAGAGCAACCTGTGGAAAACAAGAAGCAGAAAGAAGGCTGGAGGGTGAACTGGATAGATACCAGTCAGAAGTCAGTACGTTAGAAGAACAATTAAGGGAAACTGAAGACCAGTATACTCGGCAAATAAGATCATTCGAAGAGAAAGCTGCCAAATCAAAAGAGGAGTTTGGAAGATTGAAAAGCGAGCAAGAAATGAAGATGAATGAGAAAGACAAGGAGATGGAAAGGAAACTCTTTTCTACAGAGGAAGAAGTGAATAGATTGAAAGCAGAATTATCCAGCAAATCCATTAATGATGACCAGTTAAATGAATTTAAAGCTCAAATTAACATGTGGCAAACTAAATACGAAGATTTGTGGCAAAAGATTGAGCCCTTCAAGGATCAGCTAGATGAATACGAAGCTGAAAGGAATGCTCTTCTTTGTCAAAACAGTCAAGCCAAGGATGAGGTTGCCAAACTCGGCCAGCAGTATGCCAAGTTACTAGGTCACCAGAATAAGAAACAGAAGATTCATCATGTTGTAAAGCTAAAGGAGGAAAATAACAATCTCAAAGCTATCACATGGTTTATCATTGCAGATATGAATCAATCAGTGATCCAAACAAATTCTACGGAATTGTTTTGCGGAGTTCTCAATCCAAGTGTCATTACAAAAACATCAATGGTTGTAGCTTACCTTATTCTACTGAGCGCAGCTTGCGTAGAGAATTCGCTGGTTATTTATTTAGCCAGGGCATACAAAGACTTAAAACAATCCCCATTCATCTACCTTATCATCAACATGGCTATAGCTGATATACTTGACGCATGCGTCGCTACAAGCTTATCTGTGTCCTTCTCCTTTGTGGGCTCGCGATGGTTTGCGGGATTGTTTGGTACAATTTCTTGCAAGCTGGCTTATTTTATTTTAGTATTTTCCATTGGACTATCGATTTGCACGCTGATCATCATGTCGATAGACAGATACTTAGCTATTGTGCTGACAATGAGGAAGCCGTTATCTCGCACAGCAACAAAGAGGTGTATAACAATGAGTTGGATCATAGCAGCCATAACAGCCTCGCCTTATCTTTACAAGATGGGAACAGAGAAACACACTGACGGCTTCTATCACTGCTTTGCCACATGGAGCTACGATCGTGACCAGAGCTTGTTATACAGCCAATGGGAAGAGAGCCTAAAGTTTGCTGTGTTTTACGTCATTCCTTTAATTGCCATAGCAACCACTAATGCGATTATAGCTCATACGCTGAGGAAAAGACGAGCTTTGGGAAGCTGCCTATCGCAGGCTACAATAGATAAACAAAATCAAAAGATCTTTAAACTTCTTATTACAATTGTAGTGTTGTTCGCCGTGTGTTGGTCATTTGCTCATGTTCAACACTTAATGTCGGCGTTTGAACCCTTCAGATACTGTGAGCTGCCCGCCTACATTCCAATGTTTTCTTACTGGCTTGCTCACGCAAATGCGGCAATAAATCCAATCATTTATTTCGTTTTCAATAACAAGTTTCGAGAAGGCTTCACTCAAGCTCTTAAAGATTGGAAATTGATAAGTCCGCGGACAAGAATCGTCATCCCACGGGAAAATCTTGCTTTTATAAGCGGCGACACTAATATGACGGCGGACGATGGCAAGATGGATCCCGTGAAAGACTGGGGCGACACCAAACTTTGA

Transcript

OS493_029538-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O97512	Neuromedin-K receptor OS=Oryctolagus cuniculus OX=9986 GN=TACR3 PE=2 SV=2
P29371	Neuromedin-K receptor OS=Homo sapiens OX=9606 GN=TACR3 PE=1 SV=1
P47937	Neuromedin-K receptor OS=Mus musculus OX=10090 GN=Tacr3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004159 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15905 all species →	HMMR_N	Hyaluronan mediated motility receptor N-terminal	Coiled-coil	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF15908 all species →	HMMR_C	Hyaluronan mediated motility receptor C-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR031794 all species →	Domain	Hyaluronan-mediated motility receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45695 all species →	LEUCOKININ RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029538-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_029538-T1 global co-expression network