Gene detail

Detailed information of OS493_029543-T1 in Lophelia pertusa

Genomic Location: scaffold_181:151254...155714
NR annotation: KAJ7389659.1, hypothetical protein OS493_029543 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KIG0	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Bos taurus OX=9913 GN=ETFDH PE=2 SV=1
Q921G7	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Mus musculus OX=10090 GN=Etfdh PE=1 SV=1
Q6UPE1	Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Etfdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05187 all species →	ETF_QO	Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S	Family	Interproscan
PF21162 all species →	ETFQO_UQ-bd	ETF-QO, ubiquinone-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007859 all species →	Domain	ETF-QO/FixX, C-terminal domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR040156 all species →	Family	Electron transfer flavoprotein-ubiquinone oxidoreductase	Interproscan
IPR049398 all species →	Domain	ETF-QO/FixC, ubiquinone-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10617 all species →	ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004174 all species →	Molecular Function	electron-transferring-flavoprotein dehydrogenase activity	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029543-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029543-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

264.0Max TPM

55.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.68	45.72
polyp at pH7 6	18	18	36.88	50.57
coral polyp · control treatment	16	16	62.68	188.81
coral polyp · oil and dispersant treatment	16	16	85.32	166.43
coral polyp · oil treatment	16	16	45.51	57.55
coral polyp · dispersant treatment	16	16	90.05	264.05
Polyp	10	10	31.16	43.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.13
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	166.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	129.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	39.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	23.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.