Gene detail

Detailed information of OS493_029547-T1 in Lophelia pertusa

Genomic Location: scaffold_181:187439...188862
NR annotation: KAJ7389663.1, CFAP97 cilia and flagella associated protein 97 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IJ15	Cilia- and flagella-associated protein 97 OS=Xenopus tropicalis OX=8364 GN=cfap97 PE=2 SV=1
Q6ZPR1	Cilia- and flagella-associated protein 97 OS=Mus musculus OX=10090 GN=Cfap97 PE=1 SV=2
Q66H34	Cilia- and flagella-associated protein 97 OS=Rattus norvegicus OX=10116 GN=Cfap97 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009235 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13879 all species →	Hmw_CFAP97	Hemingway/CFA97	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029488 all species →	Family	Hemingway/CFA97	Interproscan
IPR038791 all species →	Family	Cilia- and flagella-associated protein 97	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23035 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029547-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029547-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.3Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.65	8.87
polyp at pH7 6	18	18	7.90	14.80
coral polyp · control treatment	16	16	14.58	26.95
coral polyp · oil and dispersant treatment	16	16	13.37	31.29
coral polyp · oil treatment	16	16	12.71	19.99
coral polyp · dispersant treatment	16	16	8.75	16.08
Polyp	10	10	9.77	14.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.87

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.