Gene detail

Detailed information of OS493_029557-T1 in Lophelia pertusa

Genomic Location: scaffold_181:256979...258341
NR annotation: KAJ7389673.1, hypothetical protein OS493_029557 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009751 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02536 all species →	mTERF	mTERF	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003690 all species →	Family	Transcription termination factor, mitochondrial/chloroplastic	Interproscan
IPR038538 all species →	Homologous_superfamily	MTERF superfamily, mitochondrial/chloroplastic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13068 all species →	CGI-12 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029557-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029557-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

15.6Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.91	5.61
polyp at pH7 6	18	16	1.96	3.76
coral polyp · control treatment	16	16	2.70	6.11
coral polyp · oil and dispersant treatment	16	16	2.94	15.64
coral polyp · oil treatment	16	16	2.30	4.33
coral polyp · dispersant treatment	16	16	1.11	1.97
Polyp	10	10	2.25	4.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.74

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.