Gene detail

Detailed information of OS493_029559-T1 in Lophelia pertusa

Genomic Location: scaffold_181:268419...270756
NR annotation: KAJ7389675.1, hypothetical protein OS493_029559 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007566 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08566 all species →	Pam17	Mitochondrial import protein Pam17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013875 all species →	Family	Mitochondrial import protein Pam17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28021 all species →	PRESEQUENCE TRANSLOCATED-ASSOCIATED MOTOR SUBUNIT PAM17, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001405 all species →	Cellular Component	PAM complex, Tim23 associated import motor	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17806	PAM17, TIM23; mitochondrial import inner membrane translocase subunit TIM23	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029559-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.7Max TPM

16.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.49	26.37
polyp at pH7 6	18	18	17.04	30.86
coral polyp · control treatment	16	16	20.68	42.92
coral polyp · oil and dispersant treatment	16	16	17.30	52.75
coral polyp · oil treatment	16	16	16.79	29.31
coral polyp · dispersant treatment	16	16	9.75	19.79
Polyp	10	10	17.11	33.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.34
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	33.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.