Gene detail

Detailed information of OS493_029589-T1 in Lophelia pertusa

Genomic Location: scaffold_181:381594...390714
NR annotation: KAJ7389691.1, hypothetical protein OS493_029589 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BFR4	N-acetylglucosamine-6-sulfatase OS=Mus musculus OX=10090 GN=Gns PE=1 SV=1
P50426	N-acetylglucosamine-6-sulfatase OS=Capra hircus OX=9925 GN=GNS PE=2 SV=1
Q1LZH9	N-acetylglucosamine-6-sulfatase OS=Bos taurus OX=9913 GN=GNS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR012251 all species →	Family	N-acetylglucosamine-6-sulfatase	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43108 all species →	N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005539 all species →	Molecular Function	glycosaminoglycan binding	Interproscan
GO:0008449 all species →	Molecular Function	N-acetylglucosamine-6-sulfatase activity	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029589-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029589-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

92.6Max TPM

32.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	42.94	59.97
polyp at pH7 6	18	18	38.08	52.83
coral polyp · control treatment	16	16	30.72	61.16
coral polyp · oil and dispersant treatment	16	16	27.69	42.02
coral polyp · oil treatment	16	16	31.37	51.27
coral polyp · dispersant treatment	16	16	20.38	37.03
Polyp	10	10	32.61	92.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.87
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	92.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	55.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.