Gene detail

Detailed information of OS493_029609-T1 in Lophelia pertusa

Genomic Location: scaffold_181:536726...542711
NR annotation: KAJ7389709.1, Chromosome 9 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P69527	Aminopeptidase O OS=Rattus norvegicus OX=10116 GN=Aopep PE=2 SV=2
Q8BXQ6	Aminopeptidase O OS=Mus musculus OX=10090 GN=Aopep PE=2 SV=3
Q8N6M6	Aminopeptidase O OS=Homo sapiens OX=9606 GN=AOPEP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004393 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR033577 all species →	Family	Aminopeptidase O	Interproscan
IPR001930 all species →	Family	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46627 all species →	AMINOPEPTIDASE O	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029609-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029609-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.3Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.64	41.49
polyp at pH7 6	18	18	16.31	52.26
coral polyp · control treatment	16	16	9.26	14.72
coral polyp · oil and dispersant treatment	16	16	7.32	11.43
coral polyp · oil treatment	16	16	9.30	14.68
coral polyp · dispersant treatment	16	16	5.66	10.87
Polyp	10	10	7.40	19.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.