Gene detail

Detailed information of OS493_029615-T1 in Lophelia pertusa

Genomic Location: scaffold_181:567893...569611
NR annotation: KAJ7389715.1, polynucleotide 3'-phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O89023	Tripeptidyl-peptidase 1 OS=Mus musculus OX=10090 GN=Tpp1 PE=1 SV=2
F8W2M8	Tripeptidyl-peptidase 1 OS=Danio rerio OX=7955 GN=tpp1 PE=1 SV=2
Q9XSB8	Tripeptidyl-peptidase 1 OS=Canis lupus familiaris OX=9615 GN=TPP1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006619 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09286 all species →	Pro-kuma_activ	Pro-kumamolisin, activation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030400 all species →	Domain	Sedolisin domain	Interproscan
IPR015366 all species →	Domain	Peptidase S53, activation domain	Interproscan
IPR036852 all species →	Homologous_superfamily	Peptidase S8/S53 domain superfamily	Interproscan
IPR023828 all species →	Active_site	Peptidase S8, subtilisin, Ser-active site	Interproscan
IPR050819 all species →	Family	Tripeptidyl-peptidase I and related peptidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14218 all species →	PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0004175 all species →	Molecular Function	endopeptidase activity	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0008240 all species →	Molecular Function	tripeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01279	TPP1, CLN2; tripeptidyl-peptidase I	EC:3.4.14.9	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029615-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

87.5Max TPM

37.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.68	57.16
polyp at pH7 6	18	18	32.40	49.09
coral polyp · control treatment	16	16	40.08	63.86
coral polyp · oil and dispersant treatment	16	16	48.22	85.89
coral polyp · oil treatment	16	16	38.75	66.27
coral polyp · dispersant treatment	16	16	27.45	47.63
Polyp	10	10	42.44	87.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.01
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.55
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	87.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	43.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.