Gene detail

Detailed information of OS493_029711-T1 in Lophelia pertusa

Genomic Location: scaffold_183:359804...364218
NR annotation: KAJ7377352.1, hypothetical protein OS493_029711 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GLK0	Protein-glutamine gamma-glutamyltransferase K OS=Canis lupus familiaris OX=9615 GN=TGM1 PE=2 SV=1
Q9JLF6	Protein-glutamine gamma-glutamyltransferase K OS=Mus musculus OX=10090 GN=Tgm1 PE=1 SV=2
P22735	Protein-glutamine gamma-glutamyltransferase K OS=Homo sapiens OX=9606 GN=TGM1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR036985 all species →	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050779 all species →	Family	Protein-glutamine gamma-glutamyltransferases	Interproscan
IPR036238 all species →	Homologous_superfamily	Transglutaminase, C-terminal domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11590 all species →	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003810 all species →	Molecular Function	protein-glutamine gamma-glutamyltransferase activity	Interproscan
GO:0018149 all species →	Biological Process	peptide cross-linking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029711-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029711-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

10.7Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.88	10.67
polyp at pH7 6	18	13	2.88	7.42
coral polyp · control treatment	16	16	3.27	6.66
coral polyp · oil and dispersant treatment	16	16	1.65	7.42
coral polyp · oil treatment	16	16	2.02	8.58
coral polyp · dispersant treatment	16	16	1.96	9.40
Polyp	10	10	4.84	10.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.